This function generates synthetic from the fixed effects model described in the experimental studies portion of the paper.

makeSimData(
H,
n,
L = 100,
maf = 0.01,
gamma0 = 1,
gammaX = 1,
gammaE = 1,
gammaG,
gammaGE,
causal = 40,
seed = 12345
)

## Arguments

H Matrix of haplotype data (e.g. cosihap) Number of individuals Number of SNPs in the G matrix (Default is 100), should be a value between 1 and 604 Minor allele frequency (Default is 0.01) gamma0 Fixed effect coefficient for intercept (Default is 1) gammaX Fixed effect coefficient for confounding covariates (Default is 1) gammaE Fixed effect coefficient for E effect (Default is 1) gammaG Fixed effect coefficient for G main effect gammaGE Fixed effect coefficient for GxE interaction effect Number of causal SNPs (default is 40) Seed (Default is 12345)

## Value

Synthetic dataset containing y, X, E, G, epsilon, and number of causal SNPs

## Examples

dat <- makeSimData(H=cosihap, n=500, L=10, gammaG=1, gammaGE=0, causal=4, seed=1)