prep.SEAGLE()
Prepare data for input into SEAGLE function
SEAGLE()
Compute score-like test statistic and p-value for GxE test with SEAGLE algorithm
makeSimData()
Generate synthetic data according to a fixed effects model
cosihap
Synthetic haplotype data generated from COSI software
Rinv.AtG()
Function for applying R inverse to AtG in REML EM algorithm
Rinv.u()
Function for applying R inverse to u in REML EM algorithm
Vinv()
Function for applying V inverse in Algorithm 1
applyAt()
Function for applying t(A) on the left for REML EM
estimate.vc()
REML EM Algorithm