Prepare data for input into SEAGLE function

Source: R/prepData.R

This function checks and formats data for input into SEAGLE function

prep.SEAGLE(y, X, intercept, E, G)

Arguments

y

Vector of observed phenotypes
X

Matrix of covariates without genetic marker interactions
intercept

1 if the first column of X is the all ones vector, 0 otherwise
E

E Vector of environmental covariates
G

G Matrix of genotype data

Value

List object containing prepared data for input into SEAGLE function

Examples

dat <- makeSimData(H=cosihap, n=500, L=10, gammaG=1, gammaGE=0, causal=4, seed=1)
objSEAGLE <- prep.SEAGLE(y=dat$y, X=dat$X, intercept=1, E=dat$E, G=dat$G)